| Name | Year |
|---|
| Summer Child | 2012 |
| What Do You Hear in These Sounds | 2005 |
| Magical Thinking | 2021 |
| Arrival | 2005 |
| Berkeley | 2021 |
| Let the Wind Blow | 2021 |
| Little Town | 2021 |
| The Hudson | 2004 |
| Flinty Kind of Woman | 2005 |
| This Is Not the House That Pain Built | 2005 |
| Mark Rothko Song | 2005 |
| You Rise and Meet the Day | 2004 |
| In Love but Not at Peace | 2005 |
| Liar | 2004 |
| The Babysitter's Here | 2005 |
| So Close to My Heart | 2004 |
| You're Aging Well | 2005 |
| Empire | 2004 |
| Beautiful Enemy | 2004 |
| The Great Unknown | 2005 |
| When Sal's Burned Down | 2005 |
| Comfortably Numb | 2004 |
| Everybody Knows This Is Nowhere | 2004 |
| When I Was a Boy | 2005 |
| Two Sides of the River | 2004 |
| Alleluia | 2005 |
| Blue Light of the Flame | 2004 |
| Echoes | 2004 |
| Slippery Slope | 2015 |
| Miss You Till I Meet You | 2004 |
| Teen for God | 2004 |
| Weight of the World | 2015 |
| Girl of the World | 2015 |
| Here Tonight | 2015 |
| New York is a Harbor | 2015 |
| Mad River | 2015 |
| Time, Be My Friend | 2021 |
| Johnny Appleseed | 2015 |
| Invisible Light ft. Dar Williams | 2012 |
| Something to Get Through | 2015 |
| FM Radio | 2015 |
| Troubled Times | 2019 |
| Empty Plane | 2015 |
| Emerald | 2015 |
| Midnight Radio | 2019 |
| The Blessings | 2005 |
| Mortal City | 2005 |
| Southern California Wants to Be Western New York | 2005 |
| This Was Pompeii | 2005 |
| The Pointless, yet Poignant, Crisis of a Co-Ed | 2005 |
| The Christians and the Pagans | 2005 |
| Family | 2005 |
| It's a War in There | 2005 |
| February | 2005 |
| As Cool as I Am | 2005 |
| My Friends | 2005 |
| Road Buddy | 2005 |
| Bought and Sold | 2005 |
| If I Wrote You | 2005 |
| Teenagers, Kick Our Butts | 2005 |
| Are You out There | 2005 |
| End of the Summer | 2005 |
| Party Generation | 2005 |
| I Never Knew | 2021 |
| Farewell to the Old Me | 2003 |
| I Saw a Bird Fly Away | 2003 |
| It Happens Every Day | 2000 |
| The Beauty of the Rain | 2003 |
| The Mercy of the Fallen | 2003 |
| Another Mystery | 2000 |
| We Learned the Sea | 2000 |
| Calling the Moon | 2000 |
| Spring Street | 2000 |
| I Had No Right | 2000 |
| After All | 2000 |
| I Won't Be Your Yoko Ono | 2000 |
| What Do You Love More Than Love | 2000 |
| And a God Descended | 2000 |
| Playing to the Firmament | 2000 |
| You Give it All Away | 2021 |
| Whispering Pines | 2003 |
| Fishing in the Morning | 2003 |
| I Have Lost My Dreams | 2003 |
| Your Fire Your Soul | 2003 |
| The End of the Summer | 2010 |
| Closer to Me | 2003 |
| The One Who Knows | 2003 |
| The World's Not Falling Apart | 2003 |
| You Won't See Me | 2005 |
| Are You out There Intro | 2001 |
| I Won't Be Your Yoko Ono Intro | 2001 |
| Iowa (featuring Sam & Sean Watkins, Motherlode & Mary Chapin Carpenter) ft. Gary Louris, Sara Watkins, Sean Watkins | 2010 |
| Iowa | 2001 |
| When I Was A Boy (featuring Patty Larkin) ft. Patty Larkin | 2010 |
| The One Who Knows (featuring Mary Chapin Carpenter) ft. Mary Chapin Carpenter | 2010 |
| Mercy of the Fallen | 2010 |
