| Name | Year |
|---|
| How to Fight Loneliness | 1999 |
| How to Fight Lonliness | 2014 |
| You and I | 2014 |
| Just a Kid | 2004 |
| Impossible Germany | 2007 |
| Heavy Metal Drummer | 2002 |
| Kamera | 2002 |
| I'll Fight | 2009 |
| I'm the Man Who Loves You | 2002 |
| Far, Far Away | 1996 |
| I Am Trying to Break Your Heart | 2002 |
| California Stars | 2014 |
| Radio Cure | 2002 |
| Ashes of American Flags | 2002 |
| When the Roses Bloom Again ft. Wilco | 2012 |
| Via Chicago | 1999 |
| Pot Kettle Black | 2002 |
| Sky Blue Sky | 2007 |
| Poor Places | 2002 |
| Blood of the Lamb ft. Wilco | 2012 |
| Please Be Patient with Me | 2007 |
| Muzzle of Bees | 2005 |
| Reservations | 2002 |
| War on War | 2002 |
| Someone Else's Song | 1996 |
| Hate It Here | 2007 |
| You Are My Face | 2007 |
| Side with the Seeds | 2007 |
| Hummingbird | 2004 |
| Either Way | 2007 |
| True Love Will Find You in the End | 2014 |
| Shake It Off | 2007 |
| Forget the Flowers | 1996 |
| Thirteen | 2006 |
| Leave Me (Like You Found Me) | 2007 |
| On and on and On | 2007 |
| What Light | 2007 |
| Solitaire | 2009 |
| Everlasting Everything | 2009 |
| Walken | 2007 |
| One Wing | 2009 |
| Bull Black Nova | 2009 |
| Dark Neon | 2009 |
| Passenger Side | 1995 |
| You Never Know | 2009 |
| Sonny Feeling | 2009 |
| Wilco (The Song) | 2009 |
| Deeper Down | 2009 |
| Country Disappeared | 2009 |
| Let's Not Get Carried Away | 2007 |
| The Thanks I Get | 2007 |
| A Shot in the Arm | 2020 |
| One True Vine | 2007 |
| Airline to Heaven | 2005 |
| Hell Is Chrome | 2005 |
| Handshake Drugs | 2005 |
| Less Than You Think | 2004 |
| The Late Greats | 2005 |
| Shot in the Arm | 2005 |
| My Darling | 2020 |
| At Least That's What You Said | 2005 |
| Wishful Thinking | 2004 |
| Comment (If All Men Are Truly Brothers) | 2005 |
| Theologians | 2004 |
| Misunderstood | 2005 |
| ELT | 2020 |
| Pieholden Suite | 2020 |
| Nothing'severgonnastandinmyway (Again) | 2020 |
| I'm a Wheel | 2004 |
| Company in My Back | 2004 |
| One by One | 2005 |
| Kicking Television | 2005 |
| I'm Always in Love | 2020 |
| Box Full of Letters | 1995 |
| When You Wake up Feeling Old | 2020 |
| She's a Jar | 2020 |
| We're Just Friends | 2020 |
| Casino Queen | 1995 |
| Pick up the Change | 1995 |
| Shouldn't Be Ashamed | 1995 |
| I Must Be High | 2014 |
| Dash 7 | 1995 |
| Blue Eyed Soul | 1995 |
| I Thought I Held You | 1995 |
| Too Far Apart | 1995 |
| That's Not the Issue | 1995 |
| It's Just That Simple | 1995 |
| Should've Been in Love | 1995 |
| Outtasite (Outta Mind) [Take 6] | 2017 |
| Lost Love | 2017 |
| Panthers | 2004 |
| Black Wind Blowing ft. Wilco | 2012 |
| Remember the Mountain Bed ft. Wilco | 2012 |
| Secret of the Sea ft. Wilco | 2012 |
| Joe DiMaggio Done It Again ft. Wilco | 2012 |
| Someday Some Morning Sometime | 2011 |
| My Flying Saucer ft. Wilco | 2012 |
| I Was Born ft. Wilco | 2012 |
| Tried and True | 2014 |
| Feed of Man ft. Wilco | 2012 |
| Candyfloss | 2020 |
| Hot Rod Hotel ft. Wilco | 2012 |
| Summer Teeth | 2020 |
| In a Future Age | 2020 |
| Kingpin | 1996 |
| New Madrid | 2020 |
| Stetson Kennedy ft. Wilco | 2012 |
| Hotel Arizona | 1996 |
| I Got You (At the End of the Century) | 1996 |
| Red-Eyed and Blue | 1996 |
| Outta Mind (Outta Sight) | 1996 |
| All You Fascists ft. Billy Bragg | 2012 |
| Outtasite (Outta Mind) | 1996 |
| Meanest Man ft. Wilco | 2012 |
| Monday | 1996 |
| Aginst Th' Law ft. Wilco | 2012 |
| Someday Soon | 1996 |
| The Lonely 1 | 1996 |
| Why Would You Wanna Live | 1996 |
| Sunken Treasure | 1996 |
| Say You Miss Me | 1996 |
| Candy Floss | 2020 |
| Dreamer in My Dreams | 1996 |
| What's the World Got in Store | 1996 |
| (Was I) In Your Dreams | 1996 |
| I'm Always in Love (Early Run Through) | 2020 |
| My Darling (Alternate) | 2020 |
| Gotta Work ft. Wilco | 2012 |
| Tried and True (Alternate) | 2020 |
| Ought to Be Satisfied Now ft. Wilco | 2012 |
| Ain'ta Gonna Grieve ft. Wilco | 2012 |
| Union Prayer ft. Wilco | 2012 |
| Go Down to the Water ft. Wilco | 2012 |
| My Thirty Thousand ft. Wilco | 2012 |
| The Jolly Banker ft. Wilco | 2012 |
| Tea Bag Blues ft. Wilco | 2012 |
| Be Kind to the Boy on the Road ft. Wilco | 2012 |
| Listening to the Wind That Blows ft. Wilco | 2012 |
| Chain of Broken Hearts ft. Wilco | 2012 |
| Bugeye Jim ft. Wilco | 2012 |
| I'm out to Get ft. Wilco | 2012 |
| Don't You Marry ft. Wilco | 2012 |
| I Might | 2014 |
| Sun's a Star | 2017 |
| Promising | 2014 |
| Old Maid | 2014 |
| Losing Interest | 2017 |
| Late Blooming Son | 2017 |
| Far Far Away | 2017 |
| Capitol City | 2017 |
| The Good Part | 2014 |
| Better When I'm Gone | 2017 |
| I Am Not Willing (with Syd Straw) ft. Syd Straw | 2014 |
| The Long Cut | 2017 |
| Bob Dylan's 49th Beard | 2014 |
| Gun | 2017 |
| Unlikely Japan | 2014 |
| One Hundred Years from Now | 2014 |
| Cars Can't Escape | 2014 |
| Woodgrain | 2014 |
| More like the Moon | 2014 |
| Just a Kid (with the Blisters) ft. The Blisters | 2014 |
| Burned | 2014 |
| Childlike and Evergreen | 2014 |
| Student Loan Stereo | 2014 |
| Let Me Come Home | 2014 |
| Glad It's Over | 2014 |
| Camera | 2014 |
| No More Poetry | 2014 |
| Don't You Honey Me | 2014 |
| Jesus, Etc. (with Andrew Bird) ft. Andrew Bird | 2014 |
| Blasting Fonda | 2014 |
| I Got You at the End of the Century | 2014 |
| Any Major Dude Will Tell You | 2014 |
| Myrna Lee | 2017 |
| Dynamite My Soul | 2017 |
