| Name | Year |
|---|
| Piano Fire ft. PJ Harvey | 2001 |
| Everytime I’m With You ft. Sparklehorse, Jason Lytle | 2010 |
| Revenge (Feat. The Flaming Lips) ft. Sparklehorse, The Flaming Lips | 2010 |
| Little Girl ft. Sparklehorse, Brian Burton, Julian Casablancas | 2010 |
| Wish You Were Here | 2009 |
| Dark Night Of The Soul (Feat. David Lynch) ft. Sparklehorse, David Lynch | 2010 |
| Sad And Beautiful World | 1994 |
| It's A Wonderful Life | 2001 |
| Sea Of Teeth | 2001 |
| Gold Day | 2001 |
| Apple Bed | 2001 |
| King Of Nails | 2001 |
| Little Fat Baby | 2001 |
| The Man Who Played God (Feat. Suzanne Vega) ft. Sparklehorse, Suzanne Vega | 2010 |
| Eyepennies ft. PJ Harvey | 2001 |
| Daddy’s Gone ft. Sparklehorse, Nina Persson, Mark Linkous | 2010 |
| More Yellow Birds | 2001 |
| Comfort Me | 2001 |
| Morning Hollow | 2001 |
| Star Eyes (I Can’t Catch It) ft. Sparklehorse, David Lynch | 2010 |
| Insane Lullaby (Feat. James Mercer) ft. Sparklehorse, James Mercer | 2010 |
| Angel’s Harp ft. Sparklehorse, Black Francis | 2010 |
| Babies On The Sun | 2001 |
| Don't Take My Sunshine Away | 2005 |
| Saint Mary | 1997 |
| Dog Door | 2001 |
| Devils New | 2001 |
| Cow | 1994 |
| Sick Of Goodbyes | 1997 |
| Weird Sisters | 1994 |
| Homecoming Queen | 1994 |
| Saturday | 1994 |
| Come On In | 1997 |
| Grim Augury (Feat. Vic Chesnutt) ft. Sparklehorse, Vic Chesnutt | 2010 |
| Mountains | 2005 |
| Jack's Obsession | 2007 |
| 850 Double Pumper Holley | 1994 |
| Spirit Ditch | 1994 |
| Rainmaker | 1994 |
| Tears On Fresh Fruit | 1994 |
| Gasoline Horseys | 1994 |
| London | 2009 |
| In The Dry | 2009 |
| Almost Lost My Mind | 2009 |
| Knives Of Summertime | 2005 |
| Shade And Honey | 2005 |
| It's Not So Hard | 2005 |
| Return To Me | 2005 |
| See The Light | 2005 |
| Ghost In The Sky | 2005 |
| Some Sweet Day | 2005 |
| Getting It Wrong | 2005 |
| Junebug | 1997 |
| I Shot A Dog | 2009 |
| All Night Home | 1997 |
| Hey, Joe | 1997 |
| Sunshine | 1997 |
| Ghost Of His Smile | 1997 |
| The Hatchet Song | 2009 |
| Hundreds Of Sparrows | 1997 |
| Dead Opera Star | 2009 |
| Caroline | 2009 |
| Maria's Little Elbows | 2009 |
| Cruel Sun | 1997 |
| Painbirds | 2009 |
| Go ft. The Flaming Lips | 2004 |
| My Yoke Is Heavy | 1999 |
| Babies On The Sun (Contains Hidden Track "Morning Hollow") | 2000 |
| Waiting For Nothing | 1999 |
| Happy Place | 1999 |
| Happy Man | 1999 |
| Heart Of Darkness | 1994 |
| Hammering The Cramps | 1994 |
| Someday I Will Treat You Good | 1994 |
| Chaos Of The Galaxy/Happy Man | 1997 |
| Silverlake ft. Sparklehorse | 2011 |
| Most Beautiful Widow In Town | 1994 |
